| Session 1 |
09:00 |
09:30 |
Workflow managers and Nextflow architecture |
| Exercises 1 |
09:30 |
09:50 |
Intro pipeline |
| Session 2 |
09:50 |
10:15 |
Channels, modules, parameters and variables |
|
10:15 |
10:30 |
Break |
| Exercises 2 |
10:30 |
11:30 |
Hello Pipeline |
| Session 3 |
11:30 |
12:00 |
Operators, executors, software management and profiles |
|
12:00 |
13:00 |
Lunch break |
| Exercises 3 |
13:00 |
13:45 |
RNA-seq pipeline |
| Session 4 |
13:45 |
14:15 |
Conditionals, scripts à la carte, report |
| Exercises 4 |
14:15 |
15:00 |
Metagenomics pipeline |
|
15:00 |
15:15 |
Break |
| Exercises 5 |
15:15 |
16:30 |
Wrap your pipeline or genomics pipeline |
| Session 5 |
16:30 |
16:45 |
nf-core |
| Q&A |
16:45 |
17:00 |
Wrap-up |